Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs58550845 chr22:50315507 C/CT 1.17E-8 171 25.47 27.33 3.6 KM Plot
PCPG rs58607194 chr2:236192541 C/T 3.73E-7 170 27.2 24.7 3.07 KM Plot
PCPG rs58631773 chr2:176195103 T/G 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs58636472 chr10:29846093 C/T 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs58660500 chr3:53086573 C/T 7.94E-6 173 25.08 27.27 11.78 KM Plot
PCPG rs58681728 chr11:18141399 A/G 3.28E-5 177 27.2 23.82 7.97 KM Plot
PCPG rs58716156 chr1:40519319 A/G 0.000336 174 25.2 27.27 25.17 KM Plot
PCPG rs587505 chr13:37505928 C/G 0.00034 178 25.7 24.7 6.37 KM Plot
PCPG rs58766116 chr16:90035545 C/G 1.26E-8 171 25.77 20.2 6.62 KM Plot
PCPG rs588001 chr3:80677375 G/A 0.000137 174 22.52 24.53 25.87 KM Plot
PCPG rs58801705 chr18:74525194 C/G 7.46E-9 174 25.6 24.83 10.17 KM Plot
PCPG rs58805214 chr14:74308515 ATGTTTT/A 4.2E-6 175 25.47 27.2 10.43 KM Plot
PCPG rs58852079 chr12:56706922 A/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs58876234 chr22:50258868 G/A 0.000157 177 25.47 20.2 15.18 KM Plot
PCPG rs58962840 chr1:40519227 A/G 0.000336 174 25.2 27.27 25.17 KM Plot